may I asked, you took out both front/rear caps?
how you protect the lens when you put in bag??
I usually carry a sling camera bag with padded lens compartments. On trips, I just leave the two ends of the lenses exposed but I always close my bag and pretty careful not to bump it around. On dusty trips, I normally close the rear end only. I do lens & camera sensor cleaning (5D is a dust magnet) with a blower and lens pen at the hotel every night. That's about it I guess. So far my lenses are pretty well kept, no scratches on the filters.