Hmmmm A while back I had alot of dust on my focusing screen too.
Done in a relatively dust free room: bathroom, where I ran a cold shower for 5 min to help reduce the amt of dust in the air.
Wore a nike dri fit shirt (basically no lint etc) + rubber glove.
1) I used a basketball pump, and pumped some air (using the needle) directed at the focusing screen with the mirror down. did it a few times
2) Next I took a very small but powerful vaccum cleaner to to "suck" near the mounting
3) repeat 1 -2 another time.
4) mirror lock up
5) repeat 1 - 2 - 1
6) release mirror lock - up
7) repeat 1 - 2
Tada.. a bit tedious, but it gave very good results.. removed almost ALL the dirt on my focusing glass..